- Class: 3
- Architecture: 3.40:3-Layer(aba) Sandwich
- Topology: 3.40.228:Dimethylsulfoxide Reductase; domain 2
- Homology: 3.40.228.10:Dimethylsulfoxide Reductase, domain 2
PDB Entries
PDB ID | OPM | Mutant | Chain Formula | Resolution | HETNAM | |||
---|---|---|---|---|---|---|---|---|
Amino Acid sequence | SCOPe Family Level | CATH Homology Level | ||||||
1aa6 | [A] | [A] | [A] | 2.3 | 4MO:MOLYBDENUM(IV) ION MGD:2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINEDINUCLEOTIDE SF4:IRON/SULFUR CLUSTER | |||
1dmr | [A] | [A] | [A] | 1.82 | 6MO:MOLYBDENUM(VI) ION O:OXYGEN ATOM PGD:2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINEDINUCLEOTIDE | |||
1dms | [A] | [A] | [A] | 1.88 | 2MO:MOLYBDENUM (IV)OXIDE PGD:2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINEDINUCLEOTIDE | |||
1e18 | [A] | [A] | [A] | 2 | 6WO:OXO-TUNGSTEN(VI) EOH:ETHANOL PGD:2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE | |||
1e5v | [A] | [A] | [A] | 2.4 | 2MO:MOLYBDENUM (IV)OXIDE PGD:2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINEDINUCLEOTIDE SO4:SULFATE ION | |||
1e60 | [A] | [A] | [A] | 2 | 2MO:MOLYBDENUM (IV)OXIDE PGD:2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINEDINUCLEOTIDE SO4:SULFATE ION | |||
1e61 | [A] | [A] | [A] | 1.9 | 2MO:MOLYBDENUM (IV)OXIDE PGD:2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINEDINUCLEOTIDE SO4:SULFATE ION | |||
1eu1 | [A] | [A] | [A] | 1.3 | 6MO:MOLYBDENUM(VI) ION CD:CADMIUM ION CSD:3-SULFINOALANINE EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID GLC:ALPHA-D-GLUCOPYRANOSE MGD:2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINEDINUCLEOTIDE O:OXYGEN ATOM SO4:SULFATE ION | |||
1fdi | [A] | [A] | [A] | 2.9 | 6MO:MOLYBDENUM(VI) ION MGD:2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINEDINUCLEOTIDE NO2:NITRITE ION SF4:IRON/SULFUR CLUSTER | |||
1fdo | [A] | [A] | [A] | 2.8 | 6MO:MOLYBDENUM(VI) ION MGD:2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINEDINUCLEOTIDE SF4:IRON/SULFUR CLUSTER | |||
1g8j | [AB] | [AB] | [AB] | 2.03 | 4MO:MOLYBDENUM(IV) ION F3S:FE3-S4 CLUSTER FES:FE2/S2 (INORGANIC) CLUSTER MGD:2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINEDINUCLEOTIDE O:OXYGEN ATOM | |||
1g8k | [AB] | [AB] | [AB] | 1.64 | 4MO:MOLYBDENUM(IV) ION CA:CALCIUM ION EDO:1,2-ETHANEDIOL F3S:FE3-S4 CLUSTER FES:FE2/S2 (INORGANIC) CLUSTER HG:MERCURY (II) ION MGD:2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINEDINUCLEOTIDE O:OXYGEN ATOM | |||
1h0h | [AB] | [AB] | [AB] | 1.8 | 2MD:GUANYLATE-O___sq___-PHOSPHORIC ACID MONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,5,6,7,8A,9,10,10A-OCTAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL) ESTER CA:CALCIUM ION EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID MGD:2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINEDINUCLEOTIDE SF4:IRON/SULFUR CLUSTER UNX:UNKNOWN ATOM OR ION W:TUNGSTEN ION | |||
1h5n | [A] | [A] | [A] | 2 | 6MO:MOLYBDENUM(VI) ION PGD:2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINEDINUCLEOTIDE SO4:SULFATE ION | |||
1kqf | [A3B3C3] | [A3B3C3] | [A3B3C3] | 1.6 | 6MO:MOLYBDENUM(VI) ION CDL:CARDIOLIPIN HEM:PROTOPORPHYRIN IX CONTAINING FE MGD:2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINEDINUCLEOTIDE SF4:IRON/SULFUR CLUSTER | |||
1kqg | [A3B3C3] | [A3B3C3] | [A3B3C3] | 2.8 | 6MO:MOLYBDENUM(VI) ION CDL:CARDIOLIPIN HEM:PROTOPORPHYRIN IX CONTAINING FE HQO:2-HEPTYL-4-HYDROXY QUINOLINE N-OXIDE MGD:2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINEDINUCLEOTIDE SF4:IRON/SULFUR CLUSTER | |||
1ogy | [AB] | [AB] | [AB] | 3.2 | HEC:HEME C MGD:2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINEDINUCLEOTIDE MO:MOLYBDENUM ATOM SF4:IRON/SULFUR CLUSTER | |||
1q16 | [ABC] | [ABC] | [ABC] | 1.9 | 3PH:1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE 6MO:MOLYBDENUM(VI) ION AGA:(1S)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PENTANOYLOXY)METHYL]ETHYLOCTANOATE F3S:FE3-S4 CLUSTER FME:N-FORMYLMETHIONINE HEM:PROTOPORPHYRIN IX CONTAINING FE MD1:PHOSPHORIC ACID 4-(2-AMINO-4-OXO-3,4,5,6,-TETRAHYDRO-PTERIDIN-6-YL)-2-HYDROXY-3,4-DIMERCAPTO-BUT-3-EN-YLESTER GUANYLATE ESTER SF4:IRON/SULFUR CLUSTER | |||
1siw | [ABC] | [ABC] | [ABC] | 2.2 | 3PH:1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE F3S:FE3-S4 CLUSTER FME:N-FORMYLMETHIONINE GDP:GUANOSINE-5___sq___-DIPHOSPHATE HEM:PROTOPORPHYRIN IX CONTAINING FE SF4:IRON/SULFUR CLUSTER | |||
1tmo | [A] | [A] | [A] | 2.5 | 2MD:GUANYLATE-O___sq___-PHOSPHORIC ACID MONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,5,6,7,8A,9,10,10A-OCTAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL) ESTER 2MO:MOLYBDENUM (IV)OXIDE | |||
2dmr | [A] | [A] | [A] | 2.8 | 4MO:MOLYBDENUM(IV) ION O:OXYGEN ATOM PGD:2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINEDINUCLEOTIDE SO2:SULFUR DIOXIDE | |||
2e7z | [A] | [A] | [A] | 1.26 | ACT:ACETATE ION MGD:2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINEDINUCLEOTIDE MPD:(4S)-2-METHYL-2,4-PENTANEDIOL NA:SODIUM ION SF4:IRON/SULFUR CLUSTER W:TUNGSTEN ION | |||
2iv2 | [A] | [A] | [A] | 2.27 | 2MD:GUANYLATE-O___sq___-PHOSPHORIC ACID MONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,5,6,7,8A,9,10,10A-OCTAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL) ESTER MGD:2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINEDINUCLEOTIDE MO:MOLYBDENUM ATOM SF4:IRON/SULFUR CLUSTER UNX:UNKNOWN ATOM OR ION | |||
2jim | [A] | [A] | [A] | 2.45 | MGD:2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE MO:MOLYBDENUM ATOM S:SULFUR ATOM SF4:UNKNOWN ATOM OR ION | |||
2jio | [A] | [A] | [A] | 2.2 | MGD:2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE MO:MOLYBDENUM ATOM SF4:IRON/SULFUR CLUSTER UNX:UNKNOWN ATOM OR LIGAND | |||
2jip | [A] | [A] | [A] | 2.3 | MGD:2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE MO:MOLYBDENUM ATOM SF4:IRON/SULFUR CLUSTER UNX:UNKNOWN ATOM OR ION | |||
2jiq | [A] | [A] | [A] | 2.44 | MGD:2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE MO:MOLYBDENUM ATOM NO2:NITRITE ION NO3:NITRATE ION SF4:IRON/SULFUR CLUSTER UNX:UNKNOWN ATOM OR ION | |||
2jir | [A] | [A] | [A] | 2.35 | CYN:CYANIDE ION MGD:2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE MO:MOLYBDENUM ATOM NO2:NITRITE ION SF4:IRON/SULFUR CLUSTER | |||
2nap | [A] | [A] | [A] | 1.9 | MES:2-(N-MORPHOLINO)-ETHANESULFONIC ACID MGD:2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINEDINUCLEOTIDE MO:MOLYBDENUM ATOM SF4:IRON/SULFUR CLUSTER | |||
2nya | [A] | [A] | [A] | 2.5 | 6MO:MOLYBDENUM(VI) ION MGD:2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINEDINUCLEOTIDE SF4:IRON/SULFUR CLUSTER | |||
2v3v | [A] | [A] | [A] | 1.99 | LCP:PERCHLORATE ION MGD:2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE MO:MOLYBDENUM ATOM SF4:IRON/SULFUR CLUSTER UNX:UNKNOWN ATOM OR ION | |||
2v45 | [A] | [A] | [A] | 2.4 | LCP:PERCHLORATE ION MGD:2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE MO:MOLYBDENUM ATOM SF4:IRON/SULFUR CLUSTER UNX:UNKNOWN ATOM OR ION | |||
2vpw | [A2B2C2] | [A2B2C2] | [A2B2C2] | 3.1 | MGD:2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINEDINUCLEOTIDE MO:MOLYBDENUM ATOM MQ7:MENAQUINONE-7 SF4:IRON/SULFUR CLUSTER | |||
2vpx | [A2B2C2] | [A2B2C2] | [A2B2C2] | 3.1 | MGD:2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE MO:MOLYBDENUM ATOM SF4:IRON/SULFUR CLUSTER UQ1:UBIQUINONE-1 | |||
2vpy | [A2B2C2] | [A2B2C2] | [A2B2C2] | 2.5 | MGD:2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE MO:MOLYBDENUM ATOM PCI:PENTACHLOROPHENOL SF4:IRON/SULFUR CLUSTER | |||
2vpz | [A2B2C2] | [A2B2C2] | [A2B2C2] | 2.4 | MGD:2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE MO:MOLYBDENUM ATOM SF4:IRON/SULFUR CLUSTER | |||
3dmr | [A] | [A] | [A] | 2.5 | 6MO:MOLYBDENUM(VI) ION O:OXYGEN ATOM PGD:2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINEDINUCLEOTIDE | |||
3ir7 | [ABC] | [ABC] | [ABC] | 2.5 | 6MO:MOLYBDENUM(VI) ION AGA:(1S)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PENTANOYLOXY)METHYL]ETHYLOCTANOATE F3S:FE3-S4 CLUSTER FME:N-FORMYLMETHIONINE HEM:PROTOPORPHYRIN IX CONTAINING FE MD1:PHOSPHORIC ACID 4-(2-AMINO-4-OXO-3,4,5,6,-TETRAHYDRO-PTERIDIN-6-YL)-2-HYDROXY-3,4-DIMERCAPTO-BUT-3-EN-YLESTER GUANYLATE ESTER SF4:IRON/SULFUR CLUSTER | |||
3ml1 | [AB] | [AB] | [AB] | 1.6 | HEC:HEME C MGD:2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINEDINUCLEOTIDE MOS:DIOXOTHIOMOLYBDENUM(VI) ION SF4:IRON/SULFUR CLUSTER | |||
3o5a | [AB] | [AB] | [AB] | 1.72 | CL:CHLORIDE ION FMT:FORMIC ACID HEC:HEME C MGD:2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINEDINUCLEOTIDE MOS:DIOXOTHIOMOLYBDENUM(VI) ION OCS:CYSTEINESULFONIC ACID SF4:IRON/SULFUR CLUSTER | |||
4aay | [A2B2] | [A2B2] | [A2B2] | 2.7 | 4MO:MOLYBDENUM(IV) ION F3S:FE3-S4 CLUSTER FES:FE2/S2 (INORGANIC) CLUSTER MGD:2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE O:OXYGEN ATOM | |||
4dmr | [A] | [A] | [A] | 1.9 | 4MO:MOLYBDENUM(IV) ION DMS:DIMETHYL SULFOXIDE O:OXYGEN ATOM PGD:2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINEDINUCLEOTIDE | |||
5nqd | [A2B2] | [A2B2] | [A2B2] | 2.2 | 4MO:MOLYBDENUM(IV) ION EDO:1,2-ETHANEDIOL F3S:FE3-S4 CLUSTER FES:FE2/S2 (INORGANIC) CLUSTER GOL:GLYCEROL MGD:2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINEDINUCLEOTIDE O:OXYGEN ATOM P33:3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL PEG:DI(HYDROXYETHYL)ETHER PGE:TRIETHYLENE GLYCOL SO4:SULFATE ION |
*Chain Formula of OLIGAMI.
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA